Basic Information
VIS ID
TVIS30011292
Fusion event
HIV-LOC105378909 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
112898444/112355822 (Hg38)
End
112898444/112355822 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105378909
Nearest miRNA
hsa-mir-101-1/Upstream/2756855; hsa-mir-11399/Downstream/105948;
Nearest TSS
ENST00000473358/Upstream/365286; ENST00000502356/Downstream/4706;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/364671, chr1-CpG: 25/Downstream/40051
Nearby gene
CTTNBP2NL(No orient, 40356)
Upstream sequence
AACTTAGGGATGGCACTGAGGGAGGTCCAAGTCACAGTGTTGAGATGGTGGCAAACAAGAACATCAAAAACTTCAGGCTGGCATCTTCTGTGGCCATGGG
Downstream sequence
CAGAGATCTGCTCAGGCTGCTGTCCAAATTCACTCTGTTGGGCAGAAAGGAGCTGATTTATGTCTCCAGCAGGTATGCCAGAGAAAATTCAAATTGATCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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