Basic Information
VIS ID
TVIS30011293
Fusion event
HIV-ST7L integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
113075269/112532647 (Hg38)
End
113075269/112532647 (Hg38)
Orient
+
Location type
Intronic
Target gene
ST7L
miRNAs that regulate target gene
hsa-mir-24-3p ; hsa-mir-18a-3p ; hsa-mir-6816-5p ; hsa-mir-3196 ; hsa-mir-3180-3p ; hsa-mir-3180 ; hsa-mir-7154-3p ; hsa-mir-7106-5p ; hsa-mir-4731-5p ; hsa-mir-7515 ; hsa-mir-7113-5p ; hsa-mir-6754-5p ; hsa-mir-4441 ; hsa-mir-4756-5p ; hsa-mir-4270 ; hsa-mir-4739 ; hsa-mir-1321 ; hsa-mir-23a-3p
Nearest miRNA
hsa-mir-101-1/Upstream/70814; hsa-mir-11399/Downstream/349403;
Nearest TSS
ENST00000473358/Upstream/5695; ENST00000485542/Downstream/9328;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/22968, chr1-CpG: 76/Downstream/86322
Upstream sequence
TCATCTGCAAGGATGTTTAAAGGAAACATAGCCCTTTTCTACACTTTGAACAGTTTTATTTCTAGAATGCTTGAAATTACAGAGTGAGGTCAGAAGGTGA
Downstream sequence
TTATGTGATCTGCATTCTCTGAATATCCTACTCTTAATTTTGTTAAGTATTATTGAATCCCAAATAATTTCTCTCCTTGAAGCTGGCTACTGTCAAGACA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate