Basic Information
VIS ID
TVIS30011307
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
149816691/149845124 (Hg38)
End
149816691/149845124 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA1F
Nearest miRNA
hsa-mir-101-1/Upstream/1456761; hsa-mir-1182/Downstream/647221;
Nearest TSS
ENST00000473358/Upstream/2388; ENST00000608318/Downstream/692;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/1647, chr1-CpG: 288/Downstream/5210
Nearby gene
HIST2H2AA4(No orient, 2373)
Upstream sequence
ATAACCTAATTATATGTGGGGGAAGGTAGTGGTCAACATTTGGTCCTGGGGACTGAGAATAAGAGCAGGAAAGCAATAAACAGCTAACTATGAGAGTGAC
Downstream sequence
TTAATGTAATTATATTACCTGTCAATCGCTACTTTTCCTTTCTTACCAAAATTCACACAGGTATGAAAGCAATATGACATTCAGGCTCCATTATGTGTAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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