VISDB Viral Integration Site DataBase

VIS ID

TVIS30011314

Fusion event

HIV-MCL1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

q21.2

Reference genome

Start

End

150547187/150574711 (Hg38)

Orient

-

Location type

UTR3

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-16-5p ; hsa-mir-15a-5p ; hsa-mir-193a-3p ; hsa-mir-133b ; hsa-mir-29a-3p ; hsa-mir-29b-3p ; hsa-mir-29c-3p ; hsa-mir-101-3p ; hsa-mir-153-3p ; hsa-mir-512-5p ; hsa-mir-320a ; hsa-mir-193b-3p ; hsa-mir-518a-5p ; hsa-mir-582-5p ; hsa-mir-661 ; hsa-mir-876-3p ; hsa-mir-892b ; hsa-mir-148b-5p ; hsa-mir-886-3p ; hsa-mir-125b-5p ; hsa-mir-181a-5p ; hsa-mir-181b-5p ; hsa-mir-151a-3p ; hsa-mir-186-5p ; hsa-mir-26b-5p ; hsa-mir-615-3p ; hsa-mir-30d-5p ; hsa-mir-133a-3p ; hsa-mir-26a-5p ; hsa-mir-3679-3p ; hsa-mir-139-5p ; hsa-mir-761 ; hsa-mir-20a-5p ; hsa-mir-7153-3p ; hsa-mir-596 ; hsa-mir-4293 ; hsa-mir-6747-3p ; hsa-mir-4773 ; hsa-mir-7159-3p ; hsa-mir-495-3p ; hsa-mir-5688 ; hsa-mir-106b-5p ; hsa-mir-1264 ; hsa-mir-3184-3p ; hsa-mir-8080 ; hsa-mir-4452 ; hsa-mir-1469 ; hsa-mir-545-5p ; hsa-mir-144-3p ; hsa-mir-200a-3p ; hsa-mir-141-3p ; hsa-mir-7702 ; hsa-mir-5682 ; hsa-mir-767-5p ; hsa-mir-6871-3p ; hsa-mir-6836-3p ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-6778-3p ; hsa-mir-6771-3p ; hsa-mir-660-3p ; hsa-mir-6749-3p ; hsa-mir-5193 ; hsa-mir-32-5p ; hsa-mir-92b-3p ; hsa-mir-92a-3p ; hsa-mir-93-5p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-17-5p ; hsa-mir-125a-5p ; hsa-mir-302b-3p ; hsa-mir-34a-5p ; hsa-mir-339-3p ; hsa-mir-30c-5p ; hsa-mir-1207-5p ; hsa-mir-1909-3p ; hsa-mir-211-3p ; hsa-mir-3127-5p ; hsa-mir-3153 ; hsa-mir-320b ; hsa-mir-320c ; hsa-mir-320d ; hsa-mir-4270 ; hsa-mir-4429 ; hsa-mir-4441 ; hsa-mir-4736 ; hsa-mir-4763-3p ; hsa-mir-5000-5p ; hsa-mir-6508-5p ; hsa-mir-6722-3p ; hsa-mir-6733-5p ; hsa-mir-6739-5p ; hsa-mir-6754-5p ; hsa-mir-6757-5p ; hsa-mir-6783-5p ; hsa-mir-7150 ; hsa-mir-8065 ; hsa-mir-8067

Nearest miRNA

hsa-mir-101-1/Upstream/22697; hsa-mir-1182/Downstream/971085;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/12886, chr1-CpG: 103/Downstream/4141

Nearest cancer related gene

MCL1(OG, No orient, 0)

Upstream sequence

ACACTACATTTGACAACCAACATTAATTTGTAGTTGGTCCTAACCCTTCCTGGCACAGCTATCAAAAGTACAGCTGTTTAACCAGAACCAAGGTGTTCAC

Downstream sequence

CCCCCACAGAATGTACATGAAACACTAGAGGACTGCATGTTTTTCCCTGAGAGAAGCGTAAGACAAACAGAAGTCAAAAAGTAGTCACTGGGAGCGCCAT