VISDB Viral Integration Site DataBase

VIS ID

TVIS30011317

Fusion event

HIV-POGZ integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

q21.3

Reference genome

Start

End

151401879/151429403 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-130b-3p ; hsa-mir-9-5p ; hsa-mir-221-3p ; hsa-mir-34a-5p ; hsa-mir-19b-3p ; hsa-mir-324-3p ; hsa-mir-27b-3p ; hsa-mir-92a-3p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-212-5p ; hsa-mir-3153 ; hsa-mir-6733-5p ; hsa-mir-6739-5p ; hsa-mir-186-3p ; hsa-mir-580-5p ; hsa-mir-641 ; hsa-mir-3617-5p ; hsa-mir-2110 ; hsa-mir-432-3p ; hsa-mir-580-3p ; hsa-mir-6780b-5p ; hsa-mir-4694-5p ; hsa-mir-4725-3p ; hsa-mir-4271 ; hsa-mir-1193 ; hsa-mir-3134 ; hsa-mir-5681a ; hsa-mir-8057 ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-4448 ; hsa-mir-3189-3p ; hsa-mir-6736-3p ; hsa-mir-6863 ; hsa-mir-6755-3p ; hsa-mir-548aw ; hsa-mir-513b-5p ; hsa-mir-19a-3p ; hsa-mir-1468-3p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-125b-2-3p ; hsa-mir-4457 ; hsa-mir-3613-3p ; hsa-mir-454-3p ; hsa-mir-3666 ; hsa-mir-4295 ; hsa-mir-301b-3p ; hsa-mir-301a-3p ; hsa-mir-130a-3p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-4307

Nearest miRNA

hsa-mir-101-1/Upstream/877389; hsa-mir-1182/Downstream/116393;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/29297, chr1-CpG: 112/Downstream/29347

Upstream sequence

AGTTTGCATTAATAACATAGTCTTAATAGCTGACTAAATACCAGTTACAGAAAAATGACTGTAAACTCTGTTTTACTACTTGATGAAGGGTGGTGAAAAG

Downstream sequence

CTAAACAGAAATAAATAAAACCACCACCCTGGCCAAAGGTTAGAAGCAGATTTTTTAAAATTGGGCTTAAATCattaatatttttatatttttaGATTTT