Basic Information
VIS ID
TVIS30011319
Fusion event
HIV-S100A10 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
151960005/151987529 (Hg38)
End
151960005/151987529 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA1F
Target gene
S100A10
miRNAs that regulate target gene
hsa-mir-100-5p
Nearest miRNA
hsa-mir-101-1/Upstream/441638; hsa-mir-1182/Downstream/1702176;
Nearest TSS
ENST00000473358/Upstream/77721; ENST00000432386/Downstream/5049;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/77598, chr1-CpG: 108/Downstream/5652
Upstream sequence
TACGAAAACTTCACCCTTCTAAGCTTAAAGTGGTAACTTGGTTCAGTGTGATTCTAGGGTTTAGAAATCTGCTTACAAATGAATTTATCTGCTGGGTATA
Downstream sequence
TATGTAttctttttttttttttttttttgagacggagtcttgctctgttgcccaggctggagtgcagtggcgccatctcggctcgctgcaagctccgctt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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