Basic Information
VIS ID
TVIS30011338
Fusion event
HIV-CD48 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
160678162/160708372 (Hg38)
End
160678162/160708372 (Hg38)
Orient
-
Location type
Intronic
Target gene
CD48
Nearest miRNA
hsa-mir-101-1/Upstream/808293; hsa-mir-1182/Downstream/518814;
Nearest TSS
ENST00000473358/Upstream/32001; ENST00000488819/Downstream/3431;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/288776, chr1-CpG: 24/Downstream/93521
Upstream sequence
AGTGAGCTCATTATGAAATGTGAACTTTAGGCTCACAGCTTCTGCTTTCTCATTTCCCACAGTGgccactaaagattttaagcagaagagtgatgcaaac
Downstream sequence
agagaaccattttagaaaatgtataccgacagcagggtagagaacaggttagctagagagaatgcagtaaatagagcagttaggatagtggatcattgtg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate