Basic Information
VIS ID
TVIS30011339
Fusion event
HIV-LY9 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
160774004/160804214 (Hg38)
End
160774004/160804214 (Hg38)
Orient
-
Location type
Intronic
Target gene
LY9
Nearest miRNA
hsa-mir-101-1/Upstream/904135; hsa-mir-1182/Downstream/422972;
Nearest TSS
ENST00000473358/Upstream/8003; ENST00000479663/Downstream/5535;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/2051, chr1-CpG: 41/Downstream/216714
Upstream sequence
ttcagtactatgttgaataaaagtagtgaaagtgggtatccttatcttgttcgagttctcagaagaaaggctttcagcttttccccatttggtacaatgc
Downstream sequence
taattgtggaattgtcatatatgggctttactattttgaggtatattccttctatgcctagtttgttgagaaattttttcaggaagggatttggactgta
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate