Basic Information
VIS ID
TVIS30011341
Fusion event
HIV-B4GALT3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
161150364/161180574 (Hg38)
End
161150364/161180574 (Hg38)
Orient
+
Location type
Intronic
Target gene
B4GALT3
miRNAs that regulate target gene
hsa-mir-34a-5p ; hsa-mir-98-5p ; hsa-mir-96-5p ; hsa-mir-125b-5p
Nearest miRNA
hsa-mir-101-1/Upstream/1280495; hsa-mir-1182/Downstream/46612;
Nearest TSS
ENST00000473358/Upstream/2606; ENST00000475570/Downstream/15177;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/2913, chr1-CpG: 41/Downstream/21445
Nearby gene
B4GALT3(No orient, 2606)
Upstream sequence
gcaaatgccaaataatgaaggactccacaaaccatgctaaaagagtttgggtcttatccagagggcaagaagaaggcattaaagtgctgtaaatagagag
Downstream sequence
tgctatgatcagaactttaggaaatgtggagcactaattgaagtagtcaagaccagaggcagggagactatttagaaagttactgcagaaatccaggaat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate