VISDB Viral Integration Site DataBase

VIS ID

TVIS30011342

Fusion event

HIV-DDR2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

q23.3

Reference genome

Start

End

162737687/162767897 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-21-5p ; hsa-mir-943 ; hsa-mir-4439 ; hsa-mir-3136-5p ; hsa-mir-5189-3p ; hsa-mir-6857-3p ; hsa-mir-6855-3p ; hsa-mir-4513 ; hsa-mir-4637 ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-618 ; hsa-mir-6826-3p ; hsa-mir-3928-3p ; hsa-mir-302a-5p ; hsa-mir-6859-5p ; hsa-mir-3125 ; hsa-mir-3916 ; hsa-mir-3119 ; hsa-mir-645 ; hsa-mir-6749-3p ; hsa-mir-6792-3p ; hsa-mir-6883-3p ; hsa-mir-4691-5p ; hsa-mir-7976 ; hsa-mir-6759-3p ; hsa-mir-4732-3p ; hsa-mir-454-5p ; hsa-mir-6756-3p ; hsa-mir-4704-3p ; hsa-mir-506-5p ; hsa-mir-892c-5p ; hsa-mir-129-2-3p ; hsa-mir-129-1-3p ; hsa-mir-6779-3p ; hsa-mir-4687-5p ; hsa-mir-1183 ; hsa-mir-2053 ; hsa-mir-3152-3p ; hsa-mir-4474-5p ; hsa-mir-520f-5p ; hsa-mir-548a-3p ; hsa-mir-548ar-3p ; hsa-mir-548az-3p ; hsa-mir-548e-3p ; hsa-mir-548f-3p ; hsa-mir-548g-3p ; hsa-mir-5582-3p ; hsa-mir-569 ; hsa-mir-633 ; hsa-mir-6817-3p ; hsa-mir-6873-3p ; hsa-mir-6895-3p ; hsa-mir-7110-3p ; hsa-mir-8066

Nearest miRNA

hsa-mir-101-1/Upstream/425257; hsa-mir-1182/Downstream/3140024;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/205834, chr1-CpG: 44/Downstream/22563

Nearest cancer related gene

DDR2(TSG, No orient, 0)

Upstream sequence

TGTCTGTTTGgtgtgtgtgtgtgtgtgtgtgtgtgtAGAAAAACATCCAGCTTCATTAATATTCAAGCCAAGTTTCTCACTATTCTATTTCTACTTTTGT

Downstream sequence

GTACTTGAAGGTTGTGATTATGTATCCCTCTGAGTCCCTCTTCAGACTCTGTCTATGCCAAATGATCTGaataactttttacattgtctaacactttaca