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Viral Integration Site DataBase
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TVIS30011345
Basic Information
VIS ID
TVIS30011345
Fusion event
HIV-SUCO integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
172555921/172586781 (Hg38)
End
172555921/172586781 (Hg38)
Orient
-
Location type
Intronic
Target gene
SUCO
miRNAs that regulate target gene
hsa-mir-93-5p
;
hsa-mir-26b-5p
;
hsa-mir-484
;
hsa-mir-142-3p
;
hsa-mir-20a-5p
;
hsa-mir-106b-5p
;
hsa-mir-576-5p
;
hsa-mir-3942-3p
;
hsa-mir-4263
;
hsa-mir-3978
;
hsa-mir-5100
;
hsa-mir-513a-5p
;
hsa-mir-124-5p
;
hsa-mir-5093
;
hsa-mir-10b-3p
;
hsa-mir-5002-5p
;
hsa-mir-4255
;
hsa-mir-5197-5p
;
hsa-mir-27a-3p
;
hsa-mir-27b-3p
;
hsa-mir-3681-3p
;
hsa-mir-216a-3p
;
hsa-mir-128-3p
;
hsa-mir-183-5p
;
hsa-mir-7158-5p
;
hsa-mir-4999-3p
;
hsa-mir-95-5p
;
hsa-mir-548t-5p
;
hsa-mir-548az-5p
;
hsa-mir-548n
;
hsa-mir-106a-5p
;
hsa-mir-17-5p
;
hsa-mir-20b-5p
;
hsa-mir-526b-3p
;
hsa-mir-519d-3p
;
hsa-mir-520a-3p
;
hsa-mir-520b
;
hsa-mir-302a-3p
;
hsa-mir-520c-3p
;
hsa-mir-520d-3p
;
hsa-mir-520e
;
hsa-mir-373-3p
;
hsa-mir-302e
;
hsa-mir-372-3p
;
hsa-mir-302c-3p
;
hsa-mir-302d-3p
;
hsa-mir-302b-3p
;
hsa-mir-302a-5p
;
hsa-mir-4772-5p
;
hsa-mir-383-5p
;
hsa-mir-8079
;
hsa-mir-1245a
;
hsa-mir-6876-5p
;
hsa-mir-4476
;
hsa-mir-548g-3p
;
hsa-mir-5582-3p
;
hsa-mir-548f-3p
;
hsa-mir-548e-3p
;
hsa-mir-548az-3p
;
hsa-mir-548ar-3p
;
hsa-mir-548a-3p
Nearest miRNA
hsa-mir-101-1/Upstream/442137; hsa-mir-1182/Downstream/3381589;
Nearest TSS
ENST00000473358/Upstream/17754;
ENST00000486569/Downstream/15368;
Nearest CpG islands
None/Target,
chr1-CpG: 111/Upstream/53376
,
chr1-CpG: 100/Downstream/890058
Upstream sequence
TAAAGAGTATAAGATATTTGAAATGAACCACTTAGTTCAAGATAGTATGTAATGAGACCTGCAGTGGGTATGCTTTGAACTGCAATTCCTGAGAACTATA
Downstream sequence
CTATTTCAAAAATGATATTTTGATGCTTTGAAAGGCATAGTGAGAAAATTATATTATCCTGTGTTAATCCTGAAAGTTACTGGAGATATTTATTGGGTAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Sample Information
×
Sample name
Resting CD4+
Sample type
Cell line
Gender
Female
CpG Island Information
×
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