Basic Information
VIS ID
TVIS30011347
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q25.1
Reference genome
GRCh37/hg19
Start
173071344/173102204 (Hg38)
End
173071344/173102204 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA1G
Nearest miRNA
hsa-mir-101-1/Upstream/957560; hsa-mir-1182/Downstream/2866166;
Nearest TSS
ENST00000473358/Upstream/51241; ENST00000460950/Downstream/73299;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/568799, chr1-CpG: 100/Downstream/374635
Nearby gene
TNFSF18(No orient, 51241)
Upstream sequence
CCAAATAAAATGACATGTGTAAAACTCTTTGACATGTGTGAAATATCACTTATAACCCATATGATTTAGCTTAATAGTTTAAAATTAGTGCTTAGAAATG
Downstream sequence
TAGAGATCTGAATAAATAGATATTAGCCAGGGGACACACTACATGCTAGCACATTATCGATTCTCCAAAAGCAGCTAGTTAGCAGAGCCAGTGATAAGCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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