Basic Information
VIS ID
TVIS30011356
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
188589195/188620064 (Hg38)
End
188589195/188620064 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA1K
Nearest miRNA
hsa-mir-101-1/Upstream/8181674; hsa-mir-1182/Downstream/4096264;
Nearest TSS
ENST00000473358/Upstream/111526; ENST00000445072/Downstream/90816;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/1939115, chr1-CpG: 56/Downstream/4188438
Nearby gene
LINC01037(No orient, 1142841)
Upstream sequence
CACCTCCCTATCACAAGtgctattgcctgaatgttggatcttctaaaaatatatgtgatggaacttaatacccaatttaatagtattaagcgttggggcc
Downstream sequence
tttgggaagtgattacgtcgtgagagcttcactctcacaaatgggagtagtgcccttacaaaagaggtttgagtgagctcccttgtccccttctgctatg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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