Basic Information
VIS ID
TVIS30011358
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q31.2
Reference genome
GRCh37/hg19
Start
191221064/191251934 (Hg38)
End
191221064/191251934 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA1K
Nearest miRNA
hsa-mir-101-1/Upstream/10813544; hsa-mir-1182/Downstream/1464394;
Nearest TSS
ENST00000473358/Upstream/23467; ENST00000430776/Downstream/615026;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/4570985, chr1-CpG: 56/Downstream/1556568
Nearby gene
LINC01720(No orient, 450276)
Upstream sequence
tgaattcctttcatttctttctcttgtctaattgctctggttctgacttctagtacaacgttgaataaaagtggtgaaagtggacattcttgtcttgttc
Downstream sequence
cagatcttacaggaaagactccgttttttcctggtcagtttactagctgtgggtttgtcacatctggcctgtatcaggttgaggtatgttcctcctacac
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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