Basic Information
VIS ID
TVIS30011359
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q31.2
Reference genome
GRCh37/hg19
Start
193595332/193626202 (Hg38)
End
193595332/193626202 (Hg38)
Orient
+
Fragile sites / regions
FRA1K
Nearest miRNA
hsa-mir-101-1/Upstream/489619; hsa-mir-1182/Downstream/2956211;
Nearest TSS
ENST00000473358/Upstream/321457; ENST00000448412/Downstream/52692;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/504108, chr1-CpG: 24/Downstream/2982376
Upstream sequence
ACAGTATTTGAGACTGTTTTTTCCAGTGTAATTTTTAAAGGAAAATAGTTATATTGAGTGTAATAAGTGAATTTAGGAATTATATTCTTTTTTTTGTTTG
Downstream sequence
TTTGCAGTTTTCCTTTTCAAACCAATTTCTTTAGTGCCAGACCAGTGGTGTGGGACTTAGAAGGGTATAGGACATATTTGATCAGGAAGAGCTGGGGACA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate