Basic Information
VIS ID
TVIS30011361
Fusion event
HIV-LOC107985242 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q31.3
Reference genome
GRCh37/hg19
Start
194222307/194253177 (Hg38)
End
194222307/194253177 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA1K
Target gene
LOC107985242
Nearest miRNA
hsa-mir-101-1/Upstream/1116594; hsa-mir-1182/Downstream/2329236;
Nearest TSS
ENST00000473358/Upstream/103704; ENST00000435554/Downstream/97766;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/1131083, chr1-CpG: 24/Downstream/2355401
Nearby gene
LINC01031(No orient, 887224)
Upstream sequence
agggggctcactggggctggcaggccagaactgaccatgtgattagaggactggaactttcagccccacccctgagcctcagaggaagaggagttaaaag
Downstream sequence
ttgagctgattgctaatgaccggtaatttaggcatcatgcctatgtaatgaatcctacattaatacccacaaaagaggatttagagagcttctgggttgc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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