VISDB Viral Integration Site DataBase

VIS ID

TVIS30011367

Fusion event

HIV-NAV1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

q32.1

Reference genome

Start

End

201532906/201563778 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-9-5p ; hsa-mir-7-5p ; hsa-mir-218-5p ; hsa-mir-5010-3p ; hsa-mir-2113 ; hsa-mir-758-3p ; hsa-mir-6734-5p ; hsa-mir-4316 ; hsa-mir-1294 ; hsa-mir-486-3p ; hsa-mir-3619-3p ; hsa-mir-3140-3p ; hsa-mir-6738-5p ; hsa-mir-5194 ; hsa-mir-1914-3p ; hsa-mir-423-5p ; hsa-mir-3184-5p ; hsa-mir-6743-5p ; hsa-mir-3940-3p ; hsa-mir-4688 ; hsa-mir-8081 ; hsa-mir-627-5p ; hsa-mir-937-5p ; hsa-mir-924 ; hsa-mir-3691-3p ; hsa-mir-574-5p ; hsa-mir-552-5p ; hsa-mir-6867-5p ; hsa-mir-4711-3p ; hsa-mir-580-5p ; hsa-mir-3682-5p ; hsa-mir-5581-3p ; hsa-mir-6780b-3p ; hsa-mir-3166 ; hsa-mir-3913-3p ; hsa-mir-6767-5p ; hsa-mir-8485 ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-7150 ; hsa-mir-7977 ; hsa-mir-891a-3p ; hsa-mir-3688-5p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-7974 ; hsa-mir-4736 ; hsa-mir-4763-3p ; hsa-mir-1207-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6129 ; hsa-mir-6127 ; hsa-mir-4510 ; hsa-mir-4419a ; hsa-mir-6760-5p ; hsa-mir-6873-5p ; hsa-mir-4728-5p ; hsa-mir-3665 ; hsa-mir-125a-3p ; hsa-mir-383-3p ; hsa-mir-6756-5p ; hsa-mir-7156-5p ; hsa-mir-4273 ; hsa-mir-4279 ; hsa-mir-6783-3p ; hsa-mir-1343-3p ; hsa-mir-6749-3p ; hsa-mir-452-3p ; hsa-mir-2117 ; hsa-mir-26b-3p ; hsa-mir-4469 ; hsa-mir-1266-3p ; hsa-mir-6742-3p ; hsa-mir-6852-5p ; hsa-mir-939-3p ; hsa-mir-660-3p ; hsa-mir-5193 ; hsa-mir-1470 ; hsa-mir-4667-3p ; hsa-mir-4474-3p ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-6856-5p ; hsa-mir-6758-5p ; hsa-mir-4777-3p ; hsa-mir-483-5p ; hsa-mir-4681 ; hsa-mir-8084 ; hsa-mir-5003-3p

Nearest miRNA

hsa-mir-101-1/Upstream/2704625; hsa-mir-1182/Downstream/155730;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/23589, chr1-CpG: 186/Downstream/84135

Nearby gene

RPS10P7(No orient, 43186)

Upstream sequence

gtgttattgtaggggtagaatgaggtaacatgtgaaAGACCTGCGAAGGCAGAATGCTGTGGCCCTGACAagcagaagctttgcaggcaggcagatctgg

Downstream sequence

ttgggatccgattctCTTTGGACCGTAAATTCCTggccagaagtggtggctcacacttgtaatcccaacactttgtgaggccaaggcaggagaatcacat