VISDB Viral Integration Site DataBase

VIS ID

TVIS30011368

Fusion event

HIV-IPO9 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

q32.1

Reference genome

Start

End

201799695/201830567 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-339-5p ; hsa-mir-30c-5p ; hsa-mir-619-5p ; hsa-mir-4662a-5p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-6504-3p ; hsa-mir-3159 ; hsa-mir-449b-3p ; hsa-mir-4438 ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-5687 ; hsa-mir-6070 ; hsa-mir-6793-3p ; hsa-mir-4301 ; hsa-mir-5096 ; hsa-mir-1303 ; hsa-mir-197-3p ; hsa-mir-6832-5p ; hsa-mir-193b-5p ; hsa-mir-5580-5p ; hsa-mir-3190-5p ; hsa-mir-411-5p ; hsa-mir-483-5p ; hsa-mir-4776-3p ; hsa-mir-4659b-5p ; hsa-mir-4659a-5p ; hsa-mir-5590-5p ; hsa-mir-6888-3p ; hsa-mir-3120-5p ; hsa-mir-6895-3p ; hsa-mir-4638-3p ; hsa-mir-6845-3p ; hsa-mir-3117-5p ; hsa-mir-6777-3p ; hsa-mir-3654 ; hsa-mir-6757-3p ; hsa-mir-4435 ; hsa-mir-6762-3p ; hsa-mir-4755-3p ; hsa-mir-6883-3p ; hsa-mir-331-5p ; hsa-mir-642b-5p ; hsa-mir-1294 ; hsa-mir-4316 ; hsa-mir-202-3p ; hsa-mir-4677-3p ; hsa-mir-454-5p ; hsa-mir-4678 ; hsa-mir-606 ; hsa-mir-98-5p ; hsa-let-7i-5p ; hsa-let-7g-5p ; hsa-let-7b-5p ; hsa-mir-4458 ; hsa-let-7a-5p ; hsa-let-7f-5p ; hsa-let-7c-5p ; hsa-let-7d-5p ; hsa-let-7e-5p ; hsa-mir-4500

Nearest miRNA

hsa-mir-101-1/Upstream/21865; hsa-mir-1182/Downstream/32806;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/997, chr1-CpG: 41/Downstream/58219

Upstream sequence

CTTCTGTTGGAAATATGTTAAGATTTGGGATCTAACAGGCTAAGGACCATTTTGAAGGCCCACTTGTAATTGTCATTGTTTTATAAAATATCAGATCTAT

Downstream sequence

ACAGGAGAAACCACTGGTTAGGAGAAAGCTGTTTGAGAACCATGTATAAACTAATCTAAAGGAATTTTTAGCGGCTTCTAAATAAAATTCGTTTATGCAC