VISDB Viral Integration Site DataBase

VIS ID

TVIS30011369

Fusion event

HIV-PPP1R12B integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

q32.1

Reference genome

Start

End

202443556/202474428 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-30b-5p ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-519d-3p ; hsa-mir-29a-5p ; hsa-mir-659-3p ; hsa-mir-92a-1-5p ; hsa-mir-1228-3p ; hsa-mir-1273h-5p ; hsa-mir-149-3p ; hsa-mir-188-5p ; hsa-mir-2114-3p ; hsa-mir-30b-3p ; hsa-mir-3160-3p ; hsa-mir-3192-5p ; hsa-mir-3689a-3p ; hsa-mir-3689b-3p ; hsa-mir-3689c ; hsa-mir-3689d ; hsa-mir-377-5p ; hsa-mir-4487 ; hsa-mir-455-3p ; hsa-mir-4661-3p ; hsa-mir-4728-5p ; hsa-mir-4780 ; hsa-mir-558 ; hsa-mir-6086 ; hsa-mir-6134 ; hsa-mir-623 ; hsa-mir-6499-3p ; hsa-mir-6516-5p ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-6780b-3p ; hsa-mir-6785-5p ; hsa-mir-6799-5p ; hsa-mir-6807-5p ; hsa-mir-6823-3p ; hsa-mir-6851-5p ; hsa-mir-6866-3p ; hsa-mir-6880-5p ; hsa-mir-6883-5p ; hsa-mir-7106-5p ; hsa-mir-7847-3p

Nearest miRNA

hsa-mir-101-1/Upstream/471192; hsa-mir-1182/Downstream/2973874;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/125360, chr1-CpG: 104/Downstream/168112

Upstream sequence

ccaggttggagtgcagtggtgcgatctcactgcaacctctgccttccaggttcaagtgattctcgtgcctcagcctccccggtagctaggattacaggtg

Downstream sequence

taggccactatgcaattttttctgtttttagtagagacatggtttcactgtgttggccagaatgatctcaaactcctggcctcgggtaatctgcccgcct