VISDB Viral Integration Site DataBase

VIS ID

TVIS30011371

Fusion event

HIV-NUCKS1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

q32.1

Reference genome

Start

End

205714160/205745032 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-215-5p ; hsa-mir-34a-5p ; hsa-mir-192-5p ; hsa-mir-877-3p ; hsa-mir-877-5p ; hsa-mir-505-5p ; hsa-mir-16-2-3p ; hsa-mir-93-3p ; hsa-mir-505-3p ; hsa-mir-503-5p ; hsa-mir-193b-3p ; hsa-mir-484 ; hsa-mir-301a-3p ; hsa-mir-149-5p ; hsa-mir-17-5p ; hsa-let-7b-5p ; hsa-mir-6516-3p ; hsa-mir-4274 ; hsa-mir-4803 ; hsa-mir-103a-3p ; hsa-mir-107 ; hsa-mir-3143 ; hsa-mir-136-5p ; hsa-mir-219b-5p ; hsa-mir-6834-3p ; hsa-mir-4538 ; hsa-mir-4453 ; hsa-mir-8078 ; hsa-mir-4427 ; hsa-mir-654-3p ; hsa-mir-3146 ; hsa-mir-4499 ; hsa-mir-4662b ; hsa-mir-4647 ; hsa-mir-4426 ; hsa-mir-548l ; hsa-mir-7161-5p ; hsa-mir-548u ; hsa-mir-3192-3p ; hsa-mir-5681b ; hsa-mir-4696 ; hsa-mir-7978 ; hsa-mir-4456 ; hsa-mir-548q ; hsa-mir-4299 ; hsa-mir-3151-3p ; hsa-mir-6824-3p ; hsa-mir-6764-3p ; hsa-mir-2276-5p ; hsa-mir-96-3p ; hsa-mir-4678 ; hsa-mir-570-5p ; hsa-mir-548ba ; hsa-mir-548ai ; hsa-mir-548ag ; hsa-mir-32-5p ; hsa-mir-92b-3p ; hsa-mir-92a-3p ; hsa-mir-367-3p ; hsa-mir-363-3p ; hsa-mir-25-3p ; hsa-mir-365a-3p ; hsa-mir-365b-3p ; hsa-mir-3149 ; hsa-mir-302c-5p ; hsa-mir-297 ; hsa-mir-675-3p ; hsa-mir-920 ; hsa-mir-6726-5p ; hsa-mir-5591-5p ; hsa-mir-6090 ; hsa-mir-4300 ; hsa-mir-6081 ; hsa-mir-6827-5p ; hsa-mir-219a-2-3p ; hsa-mir-219b-3p ; hsa-mir-7157-5p ; hsa-mir-4680-3p ; hsa-mir-4310 ; hsa-mir-6871-5p ; hsa-mir-6838-5p ; hsa-mir-195-5p ; hsa-mir-497-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-424-5p ; hsa-mir-383-3p ; hsa-mir-3065-3p ; hsa-mir-1208 ; hsa-mir-548c-3p ; hsa-mir-26b-5p ; hsa-mir-26a-5p ; hsa-mir-3074-5p ; hsa-mir-370-3p ; hsa-mir-3934-3p ; hsa-mir-4477b ; hsa-mir-4668-3p ; hsa-mir-4759 ; hsa-mir-589-3p ; hsa-mir-6816-3p ; hsa-mir-6893-3p ; hsa-mir-767-3p ; hsa-mir-8080

Nearest miRNA

hsa-mir-101-1/Upstream/296634; hsa-mir-1182/Downstream/729771;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/64257, chr1-CpG: 100/Downstream/4078

Upstream sequence

tcacgagagatattaatgtgattgtttacaggagtactaccctaaactagtgatggtacattactatacagtacatgcatcctgttaccttttgggaatt

Downstream sequence

ccacatttttcaaaaattttaaaccacatatggccccaatggtttcaaactaggaatgtggacttCTAATACACTCTCTGTAAAATCAAATACTGTATAT