Basic Information
VIS ID
TVIS30011375
Fusion event
HIV-RCOR3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q32.2
Reference genome
GRCh37/hg19
Start
211443441/211270099 (Hg38)
End
211443441/211270099 (Hg38)
Orient
+
Location type
Intronic
Target gene
RCOR3
miRNAs that regulate target gene
hsa-mir-200c-3p ; hsa-let-7e-5p ; hsa-mir-770-5p ; hsa-mir-5585-3p ; hsa-mir-526b-5p ; hsa-mir-4635 ; hsa-mir-10a-3p ; hsa-mir-7152-5p ; hsa-mir-486-5p
Nearest miRNA
hsa-mir-101-1/Upstream/1646589; hsa-mir-1182/Downstream/807514;
Nearest TSS
ENST00000473358/Upstream/10124; ENST00000485186/Downstream/9139;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/9307, chr1-CpG: 88/Downstream/56490
Upstream sequence
CTTCCAGGTTAGAAGTAGACTTTCAGATTATATTAAGAAGAAGTTGCGTTAACTTTTTTATCTTGACttttttttttttttgagatggagcctggctctg
Downstream sequence
ttacccaggctggagtgcagctgtgtgacctcggctcactggcaacctctgcctcctgggttcaagcagttctcctgcgtcagcctcccaagtagctgga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate