Basic Information
VIS ID
TVIS30011376
Fusion event
HIV-NSL1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q32.3
Reference genome
GRCh37/hg19
Start
212936289/212762947 (Hg38)
End
212936289/212762947 (Hg38)
Orient
+
Location type
Intronic
Target gene
NSL1
miRNAs that regulate target gene
hsa-mir-421 ; hsa-mir-26b-5p ; hsa-mir-146a-5p ; hsa-mir-146b-5p ; hsa-mir-181b-2-3p ; hsa-mir-181b-3p ; hsa-mir-3129-3p ; hsa-mir-410-3p ; hsa-mir-4420 ; hsa-mir-4434 ; hsa-mir-4516 ; hsa-mir-4531 ; hsa-mir-4735-5p ; hsa-mir-5583-5p ; hsa-mir-5703 ; hsa-mir-653-3p ; hsa-mir-7153-5p
Nearest miRNA
hsa-mir-101-1/Upstream/685262; hsa-mir-1182/Downstream/7354906;
Nearest TSS
ENST00000473358/Upstream/62962; ENST00000532433/Downstream/28634;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/62241, chr1-CpG: 45/Downstream/28577
Upstream sequence
ataggggccctcgaagaagcagtcaatgagttcagggaggggtcatagggtgaaagaagctcccagatgaattttgcgatataatcttgagtagggatga
Downstream sequence
gctctcctgaacagaacccacagggtgagtgtaaagtgtgctacagacatgagcagaggagctgggcgtccggccttatgggcatatggagaaaggcatg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate