Basic Information
VIS ID
TVIS30011383
Fusion event
HIV-ITPKB integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q42.12
Reference genome
GRCh37/hg19
Start
226920021/226732320 (Hg38)
End
226920021/226732320 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA1H
Target gene
ITPKB
miRNAs that regulate target gene
hsa-mir-186-5p ; hsa-mir-183-5p ; hsa-mir-20a-5p ; hsa-mir-106b-5p ; hsa-mir-3065-5p ; hsa-mir-590-3p ; hsa-mir-548ay-3p ; hsa-mir-548at-3p ; hsa-mir-548as-3p ; hsa-mir-548t-3p ; hsa-mir-548ap-3p ; hsa-mir-548aa ; hsa-mir-410-3p ; hsa-mir-133b ; hsa-mir-133a-3p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-1228-3p ; hsa-mir-6813-3p ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-4674 ; hsa-mir-4437 ; hsa-mir-4313 ; hsa-mir-378g ; hsa-mir-939-3p ; hsa-mir-6850-3p ; hsa-mir-4292 ; hsa-mir-6791-5p ; hsa-mir-331-3p ; hsa-mir-873-5p ; hsa-mir-3914 ; hsa-mir-941 ; hsa-mir-519d-3p ; hsa-mir-93-5p ; hsa-mir-17-5p ; hsa-mir-20b-5p ; hsa-mir-4428 ; hsa-mir-498 ; hsa-mir-561-5p ; hsa-mir-6830-5p
Nearest miRNA
hsa-mir-101-1/Upstream/810178; hsa-mir-1182/Downstream/1209270;
Nearest TSS
ENST00000473358/Upstream/63423; ENST00000521431/Downstream/5138;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/28640, chr1-CpG: 171/Downstream/4539
Upstream sequence
GCCAGtgttttttgtttttgttttttgttttgttttgaaacggagtctcactctgtagcccaggctgcagtgcagtggtacaatctcgcctcattgcaac
Downstream sequence
ctctacctccagtgttcaagcaattctcctgccttagcctcccaagtagctgggattacaggcgcccgcgaccacgccagctaatttttgtatttttagt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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