Basic Information
VIS ID
TVIS30011386
Fusion event
HIV-TTC13 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q42.2
Reference genome
GRCh37/hg19
Start
231091677/230955931 (Hg38)
End
231091677/230955931 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA1H
Target gene
TTC13
miRNAs that regulate target gene
hsa-mir-548v ; hsa-mir-645 ; hsa-mir-5690 ; hsa-mir-4691-3p ; hsa-mir-548i
Nearest miRNA
hsa-mir-101-1/Upstream/2493779; hsa-mir-1182/Downstream/63897;
Nearest TSS
ENST00000473358/Upstream/19294; ENST00000497753/Downstream/22865;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/87022, chr1-CpG: 73/Downstream/22194
Upstream sequence
TTGCCCTACTTTCTTTGGAAAGATAAATTAAGCCCAAATTCATGCTCAGAATGCTGACAATAGATACCGTTCAGTTAGCTAACCTCCAGGTAACGAGAGG
Downstream sequence
ATACCTTTAGTTTTGGTGGGGGTGGTGGAGGCAGTAATATTAGTAGTAAAAACAGCAGCAAGAATCACAGTGGCTACAGGCattgcattcttaatatgtg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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