Basic Information
VIS ID
TVIS30011387
Fusion event
HIV-GNPAT integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q42.2
Reference genome
GRCh37/hg19
Start
231398600/231262854 (Hg38)
End
231398600/231262854 (Hg38)
Orient
-
Location type
splicing
Fragile sites / regions
FRA1H
Target gene
GNPAT
miRNAs that regulate target gene
hsa-mir-24-3p ; hsa-mir-331-3p
Nearest miRNA
hsa-mir-101-1/Upstream/242930; hsa-mir-1537/Downstream/2361298;
Nearest TSS
ENST00000473358/Upstream/21638; ENST00000492459/Downstream/3280;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/21357, chr1-CpG: 101/Downstream/74665
Upstream sequence
TCTGCTGCCTAGTCATCGAAGTTACATTGACTTCCTCATGTTGTCTTTTCTTCTATACAATTATGATTTGCCTGTGCCAGTTATAGCAGCAGGAATGGGT
Downstream sequence
ATGTATTGTTTTTCTGTTTTTTTAACTGTAAAAATTAAAAAGTTCACTGGCATATTCTAGCAGTACTGAGGTATTTGAAGATGATGATGAAAATAGCCTC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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