Basic Information
VIS ID
TVIS30011391
Fusion event
HIV-KIF26B integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q44
Reference genome
GRCh37/hg19
Start
245683077/245519775 (Hg38)
End
245683077/245519775 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA1I
Target gene
KIF26B
miRNAs that regulate target gene
hsa-mir-4530 ; hsa-mir-5685 ; hsa-mir-4690-3p ; hsa-mir-634 ; hsa-mir-629-3p ; hsa-mir-3944-3p ; hsa-mir-627-3p ; hsa-mir-6795-3p ; hsa-mir-4279 ; hsa-mir-501-5p ; hsa-mir-20a-5p
Nearest miRNA
hsa-mir-101-1/Upstream/2173520; hsa-mir-3124/Downstream/1682192;
Nearest TSS
ENST00000473358/Upstream/8773; ENST00000483253/Downstream/95370;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/183859, chr1-CpG: 17/Downstream/57916
Upstream sequence
cacaaatctagatggtatagcctcctacacacctaggctagagggtaggactgttgctgtactgaatagtgtagccatttgtaacacaatggtaagtatt
Downstream sequence
tgtgtccctaaacatatctaaacacagaaaaggtacagtaaaaataagattatcttatgggaccaccagtatatatgtggttcgtccttgactgaaacgt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate