Basic Information
VIS ID
TVIS30011393
Fusion event
HIV-AHCTF1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q44
Reference genome
GRCh37/hg19
Start
247072501/246909199 (Hg38)
End
247072501/246909199 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA1I
Target gene
AHCTF1
miRNAs that regulate target gene
hsa-let-7b-5p ; hsa-mir-186-5p
Nearest miRNA
hsa-mir-101-1/Upstream/3562944; hsa-mir-3124/Downstream/292768;
Nearest TSS
ENST00000473358/Upstream/9719; ENST00000474792/Downstream/22164;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/119990, chr1-CpG: 144/Downstream/21984
Upstream sequence
tatctatctatttatatatatatAAAATTCAgccaggtgaggtggctcatgcctgtaatcccagcactttgggaggctgaggcaggcagatcatgaagtc
Downstream sequence
aggagttcaagaccagcctgaccaatatggtgaaacctcggctctactaaaaaaaaaaaaaaaaaaaattggccgcacatggtggtgtgcaactgtagtc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate