Basic Information
VIS ID
TVIS30011396
Fusion event
HIV-LOC101927964 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p15.1
Reference genome
GRCh37/hg19
Start
4096646/4054454 (Hg38)
End
4096646/4054454 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
LOC101927964
Nearest miRNA
hsa-mir-5699/Upstream/63195; hsa-mir-107/Downstream/2097742;
Nearest TSS
ENST00000439456/Upstream/2728; ENST00000434902/Downstream/189189;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/268520, chr10-CpG: 60/Downstream/771479
Upstream sequence
ggacaggtgggaattacaattcaagatgagatttgggtggaaacacagaaccaaaccgtatcaATGTTGATTAGCTATTGGGCAAATCCATGGCAGAAAA
Downstream sequence
CTTACTATAAAAACCAGATATTCACAACATTTCCAGCTGCACAGAGAACACTGACAGATGCATGAAAGAAATGTTTTCTGCCACCACGAGCTTTCTGCCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate