Basic Information
VIS ID
TVIS30011397
Fusion event
HIV-LOC101927964 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p15.1
Reference genome
GRCh37/hg19
Start
4126279/4084087 (Hg38)
End
4126279/4084087 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
LOC101927964
Nearest miRNA
hsa-mir-5699/Upstream/92828; hsa-mir-107/Downstream/2068109;
Nearest TSS
ENST00000439456/Upstream/32361; ENST00000434902/Downstream/159556;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/298153, chr10-CpG: 60/Downstream/741846
Upstream sequence
TCACCCTCTCAGCTTTCCTCTCGATACTGCATTCATCATTTCAAGAGCTTTCAGGAATGTGGGCCGTGCTGACATTTTGTAATGTCTATCAGGAATTGAG
Downstream sequence
ATTTTAGGGTAACAACATAAAATGTTCCTAAGGTGAAGGTTTTGTTGTTGTTTTTGTTGTTAATTGCCTACATTATGACAGTTTTGTACTTAATTATCAC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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