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Viral Integration Site DataBase
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TVIS30011400
Basic Information
VIS ID
TVIS30011400
Fusion event
HIV-TASOR2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p15.1
Reference genome
GRCh37/hg19
Start
5744630/5702667 (Hg38)
End
5744630/5702667 (Hg38)
Orient
-
Location type
Intronic
Target gene
TASOR2
miRNAs that regulate target gene
hsa-mir-26b-5p
;
hsa-mir-504-5p
;
hsa-mir-149-5p
;
hsa-mir-29a-5p
;
hsa-mir-142-3p
;
hsa-mir-320a
;
hsa-mir-340-5p
;
hsa-mir-524-5p
;
hsa-mir-520d-5p
;
hsa-mir-513a-3p
;
hsa-mir-320b
;
hsa-mir-320c
;
hsa-mir-513c-3p
;
hsa-mir-320d
;
hsa-mir-4280
;
hsa-mir-3606-3p
;
hsa-mir-3674
;
hsa-mir-4429
;
hsa-mir-6073
;
hsa-mir-6512-5p
;
hsa-mir-4330
;
hsa-mir-4699-3p
;
hsa-mir-106a-3p
;
hsa-mir-542-3p
;
hsa-mir-4504
;
hsa-mir-4252
;
hsa-mir-549a
Nearest miRNA
hsa-mir-5699/Upstream/1711408; hsa-mir-107/Downstream/449529;
Nearest TSS
ENST00000439456/Upstream/3174;
ENST00000527124/Downstream/6959;
Nearest CpG islands
None/Target,
chr10-CpG: 68/Upstream/16933
,
chr10-CpG: 132/Downstream/110076
Upstream sequence
aaggtcttgggcttttctttaatggaagagtttttattatagctttgatctcattactaaaatggtcattttttttttttttttttttttttttGGTAAG
Downstream sequence
Taaggatagatacgacagccaaaagagatccaaaacgggcaaaactggagccccaaaaaagaaaaccgattccgtagaatacataatttaaagtataatt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Sample Information
×
Sample name
Resting CD4+
Sample type
Cell line
Gender
Female
CpG Island Information
×
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