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VISDB
Viral Integration Site DataBase
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TVIS30011403
Basic Information
VIS ID
TVIS30011403
Fusion event
HIV-IL2RA integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p15.1
Reference genome
GRCh37/hg19
Start
6072846/6030883 (Hg38)
End
6072846/6030883 (Hg38)
Orient
+
Location type
Intronic
Target gene
IL2RA
miRNAs that regulate target gene
hsa-mir-5698
;
hsa-mir-744-3p
;
hsa-mir-4423-5p
;
hsa-mir-6501-5p
;
hsa-mir-143-5p
;
hsa-mir-4430
;
hsa-mir-3652
;
hsa-mir-122-5p
;
hsa-mir-504-3p
;
hsa-mir-3135b
;
hsa-mir-6499-3p
;
hsa-mir-367-5p
;
hsa-mir-1267
;
hsa-mir-6805-3p
;
hsa-mir-5691
;
hsa-mir-3194-3p
;
hsa-mir-629-3p
;
hsa-mir-6808-3p
;
hsa-mir-6867-3p
;
hsa-mir-4713-5p
;
hsa-mir-6868-3p
;
hsa-mir-642a-5p
;
hsa-mir-7973
;
hsa-mir-6821-3p
;
hsa-mir-6790-3p
;
hsa-mir-3124-3p
;
hsa-mir-6837-3p
;
hsa-mir-6754-3p
;
hsa-mir-412-3p
;
hsa-mir-6515-3p
;
hsa-mir-4685-3p
;
hsa-mir-4287
;
hsa-mir-7113-3p
;
hsa-mir-4469
;
hsa-mir-1248
;
hsa-mir-1237-3p
;
hsa-mir-3667-3p
;
hsa-mir-6734-3p
;
hsa-mir-877-3p
;
hsa-mir-5088-3p
;
hsa-mir-2276-5p
;
hsa-mir-6892-3p
;
hsa-mir-4302
;
hsa-mir-6866-3p
;
hsa-mir-188-5p
;
hsa-mir-4439
;
hsa-mir-3136-5p
;
hsa-mir-6857-3p
;
hsa-mir-4513
;
hsa-mir-6855-3p
Nearest miRNA
hsa-mir-5699/Upstream/2039624; hsa-mir-107/Downstream/121313;
Nearest TSS
ENST00000439456/Upstream/4882;
ENST00000467214/Downstream/31407;
Nearest CpG islands
None/Target,
chr10-CpG: 68/Upstream/52712
,
chr10-CpG: 89/Downstream/58146
Upstream sequence
atatggtatggtgggttctgttgaacatgtaaatgtaaaatatacagcagtcctagtataaaagttagggagaatggaattgtactgttttaggttttta
Downstream sequence
tatcatatagaaaatggtacaatattaagtaagtagatagtgataagttaaggattcatgctgaatagcctagagaaaccaccaaataataccacaaaga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Sample Information
×
Sample name
Resting CD4+
Sample type
Cell line
Gender
Female
CpG Island Information
×
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