Basic Information
VIS ID
TVIS30011410
Fusion event
HIV-chr10 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p14
Reference genome
GRCh37/hg19
Start
8888192/8846229 (Hg38)
End
8888192/8846229 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-3155a/Upstream/2693952; hsa-mir-107/Downstream/3284531;
Nearest TSS
ENST00000439456/Upstream/445369; ENST00000447297/Downstream/51760;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/332090, chr10-CpG: 72/Downstream/560946
Upstream sequence
TGTGCCCAGAACTGGTGTGGTGCAGCTGTGAAGGTACTGATGACCTGGACAGAGAATGCTGCTGCCAAATGAGGATATTGACTCTGGATAAGACATTGCT
Downstream sequence
ATACTTAGATTGTGCCCAATGCCTTTAGAACGTGCATTTTGACAGTTTTTCTCTCCAAGACATGCATGTGCTAGTCCAAGGGCCACCTTGGCTGAGCTTC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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