Basic Information
VIS ID
TVIS30011412
Fusion event
HIV-LINC02663 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p14
Reference genome
GRCh37/hg19
Start
9856782/9814819 (Hg38)
End
9856782/9814819 (Hg38)
Orient
-
Location type
Intronic
Target gene
LINC02663
Nearest miRNA
hsa-mir-3155a/Upstream/3662542; hsa-mir-107/Downstream/2315941;
Nearest TSS
ENST00000439456/Upstream/55582; ENST00000429539/Downstream/243903;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/406573, chr10-CpG: 30/Downstream/451376
Upstream sequence
GTTTCATTTCTAAGGTTTTTATTTCTTTATATATTTAAACACTACAATTCCATTTATTTTCTGTTATCCAGAAAACTTTCAGAATAGCAGTTTCATTGAT
Downstream sequence
GTACTTTCATTCATTCTTATCCATATTTTAAATGCACTTTCTTTATATACATTGTTTCTATCATCATAACTAAATTTGTTTATTGTGGACAAAAATAGCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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