Basic Information
VIS ID
TVIS30011414
Fusion event
HIV-CELF2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p14
Reference genome
GRCh37/hg19
Start
11309202/11267239 (Hg38)
End
11309202/11267239 (Hg38)
Orient
-
Location type
Intronic
Target gene
CELF2
miRNAs that regulate target gene
hsa-mir-425-5p ; hsa-mir-375 ; hsa-mir-324-5p ; hsa-let-7e-5p ; hsa-mir-95-3p ; hsa-mir-4717-3p ; hsa-mir-27a-3p ; hsa-mir-27b-3p ; hsa-mir-192-3p ; hsa-mir-124-5p ; hsa-mir-4275 ; hsa-mir-203a-3p ; hsa-mir-548t-3p ; hsa-mir-548ap-3p ; hsa-mir-548aa ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-4446-5p ; hsa-mir-5006-3p ; hsa-mir-4755-5p ; hsa-mir-642a-5p ; hsa-mir-329-5p ; hsa-mir-4748 ; hsa-mir-4464
Nearest miRNA
hsa-mir-3155a/Upstream/5114962; hsa-mir-107/Downstream/863521;
Nearest TSS
ENST00000439456/Upstream/95863; ENST00000604634/Downstream/52645;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/101222, chr10-CpG: 16/Downstream/34103
Upstream sequence
AGCATTGTGTTTTTACATCAAGAATGTTGGAGAAAGTTAATATTTCTCCCACTGCATTTAACATTGAAAGTGCAAATTTGGAAAATAGGATTTGTCTCCT
Downstream sequence
TCCTTAAAAAGATGAGCAATAACAAAGAAACATAATAAAGGCTCAAATGTGGTCTCCTAATGAGAGATCATGGCTTTAGGGGAAGGTAAACACCCTGGTG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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