Basic Information
VIS ID
TVIS30011417
Fusion event
HIV-chr10 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p12.31
Reference genome
GRCh37/hg19
Start
21052729/20763800 (Hg38)
End
21052729/20763800 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1265/Upstream/211754; hsa-mir-107/Downstream/732762;
Nearest TSS
ENST00000439456/Upstream/672016; ENST00000417845/Downstream/52025;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/945783, chr10-CpG: 149/Downstream/409399
Nearby gene
NEBL(No orient, 16174)
Upstream sequence
attcaacatccattcataatttaaaacacttagaaaaatgagagcaaaggaaaaggtgttcaacttgataaggagcgtctacaaaaaacctaaagctaat
Downstream sequence
atacttaatggagaaaaactgaatgctttcactgtaaaataaaaaacaaggcaagggtgtccgctcttattcaacacagtgatgaaagttctagccaaag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate