Basic Information
VIS ID
TVIS30011420
Fusion event
HIV-LOC105376456 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p12.1
Reference genome
GRCh37/hg19
Start
25066637/24777708 (Hg38)
End
25066637/24777708 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105376456
Nearest miRNA
hsa-mir-1265/Upstream/501927; hsa-mir-107/Downstream/3511550;
Nearest TSS
ENST00000439456/Upstream/54040; ENST00000610158/Downstream/174876;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/52821, chr10-CpG: 72/Downstream/174473
Nearby gene
ARHGAP21(No orient, 54040)
Upstream sequence
AAAAGAAAACCCACTGGAAAATCAGAAGAGAGAATTATTACAGCCCAATAAATAGTATGGAGCTGTAAGAAGAATAATCAACATTTATCACTATAGAAAC
Downstream sequence
AAAGATACAAATTAAAACAAAGAAGAAATATAGCTTAATGTACAGGAAAATAAATGTATGATAAACCACATAttagcgtggactagcttatgttttaatt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate