Basic Information
VIS ID
TVIS30011421
Fusion event
HIV-APBB1IP integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p12.1
Reference genome
GRCh37/hg19
Start
26750075/26461146 (Hg38)
End
26750075/26461146 (Hg38)
Orient
+
Location type
Intronic
Target gene
APBB1IP
Nearest miRNA
hsa-mir-1265/Upstream/2185365; hsa-mir-107/Downstream/1828112;
Nearest TSS
ENST00000439456/Upstream/22721; ENST00000493857/Downstream/100797;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/22083, chr10-CpG: 55/Downstream/105831
Upstream sequence
ctagatttccagcttctatattataggaacacatcataaaaggcacttggagagggcgttcagagagccagtcaaaagtatctaccacaAAAGTATTATA
Downstream sequence
AAACgaaggaagagagggaaagaaagaaggaaagaaggaaggaagggaaggagggagggaaggaaggaaggaaAAACtttttttcttatatgacttataa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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