Basic Information
VIS ID
TVIS30011422
Fusion event
HIV-ABI1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p12.1
Reference genome
GRCh37/hg19
Start
27056244/26767315 (Hg38)
End
27056244/26767315 (Hg38)
Orient
-
Location type
Intronic
Target gene
ABI1
Nearest miRNA
hsa-mir-1265/Upstream/2491534; hsa-mir-107/Downstream/1521943;
Nearest TSS
ENST00000439456/Upstream/32664; ENST00000477034/Downstream/55975;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/69156, chr10-CpG: 85/Downstream/92922
Upstream sequence
CAATTTTGTTCCTCAAAGAACTTGACCTGATACAGTAACTGCAGATATCAACTTAACAATTTGTTTACTAACAGCACCAATAGTAATAAATACCGCTTAC
Downstream sequence
CTAGCATCTCGCATCTTGATATACCCTATTTAGTGGAATTCCCATAAATCATTTTGATAAGTTATCTCTCATTTACCAACCTAAGAGTGAAGGCAAAAGA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate