Basic Information
VIS ID
TVIS30011426
Fusion event
HIV-LOC102031319 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p11.22
Reference genome
GRCh37/hg19
Start
32651990/32363062 (Hg38)
End
32651990/32363062 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
LOC102031319
Nearest miRNA
hsa-mir-1265/Upstream/1994397; hsa-mir-107/Downstream/2716536;
Nearest TSS
ENST00000439456/Upstream/15665; ENST00000638889/Downstream/15552;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/15335, chr10-CpG: 166/Downstream/594281
Upstream sequence
tgcaagtagccagctactgaacctgtatttctgctacacttttgtaaaagaaatttacatccataaaggaaatctatattagtaaaagtatctgtaacag
Downstream sequence
gaagagggagacaactctttattacctgagagacagggtttcactctgtcacctgggctagagtgcagtggcacaatctcagctcactgcaaccttgacc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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