VISDB Viral Integration Site DataBase

VIS ID

TVIS30011428

Fusion event

HIV-ITGB1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr10

Cytoband

p11.22

Reference genome

Start

End

33219304/32930376 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-183-5p ; hsa-mir-375 ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-9-3p ; hsa-mir-769-5p ; hsa-mir-186-5p ; hsa-mir-25-3p ; hsa-mir-134-5p ; hsa-mir-130b-3p ; hsa-mir-29b-3p ; hsa-mir-218-5p ; hsa-mir-183-3p ; hsa-mir-223-3p ; hsa-mir-4697-3p ; hsa-mir-3622b-5p ; hsa-mir-5588-5p ; hsa-mir-4799-3p ; hsa-mir-4720-5p ; hsa-mir-8073 ; hsa-mir-221-5p ; hsa-mir-4292 ; hsa-mir-6791-5p ; hsa-mir-4308 ; hsa-mir-1910-5p ; hsa-mir-2114-5p ; hsa-mir-3529-3p ; hsa-mir-455-3p ; hsa-mir-4452 ; hsa-mir-6126 ; hsa-mir-4493 ; hsa-mir-605-3p ; hsa-mir-4521 ; hsa-mir-3910 ; hsa-mir-548at-5p ; hsa-mir-4796-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-548n ; hsa-mir-29c-3p ; hsa-mir-29a-3p ; hsa-mir-143-3p

Nearest miRNA

hsa-mir-1265/Upstream/2561711; hsa-mir-107/Downstream/2149222;

Nearest TSS

Nearest CpG islands

None/Target, chr10-CpG: 68/Upstream/582649, chr10-CpG: 166/Downstream/26967

Nearest cancer related gene

ITGB1(TSG, No orient, 0)

Upstream sequence

CAGTAAATGCTCTATCTTGTAATTCAGAGTATCTAATCAAAAGCAATTTCTTTAGTGAAATCACTAATTGAGCATGGTTAATGGCTACTAATAATGTATa

Downstream sequence

catacacccaaatatcagatcatttctccaaaatttccctttgaaaagtccttacaaagcgtctcatattatgtggcactctccccatcgcaatatgctg