Basic Information
VIS ID
TVIS30011439
Fusion event
HIV-ZNF365 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
64231837/62472078 (Hg38)
End
64231837/62472078 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA10C
Target gene
ZNF365
miRNAs that regulate target gene
hsa-mir-193b-3p ; hsa-mir-7-5p ; hsa-mir-223-3p
Nearest miRNA
hsa-mir-1265/Upstream/5167519; hsa-mir-107/Downstream/900879;
Nearest TSS
ENST00000439456/Upstream/96534; ENST00000461412/Downstream/48370;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/97417, chr10-CpG: 152/Downstream/332597
Upstream sequence
CCTGTAAGTGTTCAAGCTTCAACAATCTGCCTTTTCTGATGGTGTAGTTACATGGGAGAAGTGAGCCAGAGCTGGGGTGCATAGCACAATACACAGCCTG
Downstream sequence
CTACTTAGCTATCGGGCTCCCTGATTTAACATGCACCTGTCATAGATTACATTTACCGTTTTCCAAGTGGTGCCCTTCAAGCTGAGTCCATGTGGTGTCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate