Basic Information
VIS ID
TVIS30011444
Fusion event
HIV-chr10 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
74040932/72281174 (Hg38)
End
74040932/72281174 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1265/Upstream/490374; hsa-mir-107/Downstream/439855;
Nearest TSS
ENST00000439456/Upstream/5194; ENST00000431638/Downstream/55691;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/6234, chr10-CpG: 55/Downstream/16503
Nearby gene
DDIT4(No orient, 5135)
Upstream sequence
ggaggctgaggcacgagaatcgcttgaacccaggaggcggaggttgcagagagccgaggtggcgccattgcactccagcccagataacaagagtgaaact
Downstream sequence
ccatctcaaaaaaaaaaaaGTTCTCTcacacacatacacacatgtacatacataatcacacacacctacataatcacacacgcTTTTAATAAGTAAAACG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate