Basic Information
VIS ID
TVIS30011447
Fusion event
HIV-SEC24C integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q22.2
Reference genome
GRCh37/hg19
Start
75509536/73749778 (Hg38)
End
75509536/73749778 (Hg38)
Orient
+
Location type
Intronic
Target gene
SEC24C
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-375 ; hsa-mir-877-5p ; hsa-mir-615-3p ; hsa-mir-222-3p ; hsa-mir-181b-5p ; hsa-mir-203b-3p ; hsa-mir-3670 ; hsa-mir-4481 ; hsa-mir-4654 ; hsa-mir-4745-5p ; hsa-mir-4764-5p ; hsa-mir-4769-5p ; hsa-mir-5187-5p ; hsa-mir-6728-5p ; hsa-mir-6854-5p ; hsa-mir-759 ; hsa-mir-892b
Nearest miRNA
hsa-mir-1265/Upstream/1028678; hsa-mir-107/Downstream/1802680;
Nearest TSS
ENST00000439456/Upstream/2911; ENST00000634508/Downstream/10332;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/5314, chr10-CpG: 111/Downstream/22434
Upstream sequence
gattacaggcacatgccaccacgcccggctaatttttatatttttagtagagacagggtttcaccatgttggccaggctggtctcgaactcctgacttcg
Downstream sequence
tgatccacctgccttggcctcccaaagtgctgggattacaggcgtgagccaccacgtccagccTTACCTTACTTTCTCAAGAAGAGCAGCTAGTACTCTA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate