VISDB Viral Integration Site DataBase

VIS ID

TVIS30011451

Fusion event

HIV-SAMD8 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr10

Cytoband

q22.2

Reference genome

Start

End

76891728/75131970 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-93-5p ; hsa-mir-33a-5p ; hsa-mir-32-5p ; hsa-mir-19b-3p ; hsa-mir-7-1-3p ; hsa-mir-7-2-3p ; hsa-mir-376a-3p ; hsa-mir-376b-3p ; hsa-mir-495-3p ; hsa-mir-559 ; hsa-mir-576-3p ; hsa-mir-548b-5p ; hsa-mir-548a-5p ; hsa-mir-548c-5p ; hsa-mir-548d-5p ; hsa-mir-548j-5p ; hsa-mir-548h-5p ; hsa-mir-548i ; hsa-mir-548w ; hsa-mir-548y ; hsa-mir-548o-5p ; hsa-mir-548ab ; hsa-mir-548ad-5p ; hsa-mir-548ae-5p ; hsa-mir-548ak ; hsa-mir-548am-5p ; hsa-mir-548ap-5p ; hsa-mir-548aq-5p ; hsa-mir-548ar-5p ; hsa-mir-548as-5p ; hsa-mir-548au-5p ; hsa-mir-5688 ; hsa-mir-548ay-5p ; hsa-mir-548bb-5p ; hsa-mir-17-5p ; hsa-mir-19a-3p ; hsa-mir-20a-5p ; hsa-mir-106a-5p ; hsa-mir-130a-3p ; hsa-mir-106b-5p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-20b-5p ; hsa-mir-519c-3p ; hsa-mir-526b-3p ; hsa-mir-519b-3p ; hsa-mir-519d-3p ; hsa-mir-520g-3p ; hsa-mir-520h ; hsa-mir-519a-3p ; hsa-mir-454-3p ; hsa-mir-301b-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-548aw ; hsa-mir-143-3p ; hsa-mir-4770 ; hsa-mir-6088 ; hsa-mir-3609 ; hsa-mir-548ah-5p ; hsa-mir-4796-3p ; hsa-mir-487a-3p ; hsa-mir-154-3p ; hsa-mir-8054 ; hsa-mir-548l ; hsa-mir-548k ; hsa-mir-548av-5p ; hsa-mir-5096 ; hsa-mir-197-3p ; hsa-mir-6832-5p ; hsa-mir-4755-3p ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-655-5p ; hsa-mir-1279 ; hsa-mir-5089-5p ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-1295b-3p ; hsa-mir-5009-3p ; hsa-mir-512-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-6802-3p ; hsa-mir-1468-3p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-500b-3p ; hsa-mir-3973 ; hsa-mir-205-3p ; hsa-mir-888-5p ; hsa-mir-1912 ; hsa-mir-1295b-5p ; hsa-mir-2114-3p ; hsa-mir-576-5p ; hsa-mir-4263 ; hsa-mir-4764-3p ; hsa-mir-1976 ; hsa-mir-8073 ; hsa-mir-221-5p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-660-3p ; hsa-mir-5193 ; hsa-mir-5684 ; hsa-mir-603

Nearest miRNA

hsa-mir-1265/Upstream/2410870; hsa-mir-107/Downstream/420488;

Nearest TSS

Nearest CpG islands

None/Target, chr10-CpG: 68/Upstream/20108, chr10-CpG: 109/Downstream/78264

Upstream sequence

actgtgcattagaatcacgtggggagctttttaaaaaatgcagatataaaatttctgtctcttctgagattctgattcagttgtcctaggatgaggcatg

Downstream sequence

gacattgatacaaatacactgtaaaatttcagactattctaatgtatagccagggttgaaaaccTTTGTATATGTAGTTTCCTTGGAAGCCTAGGCAAAG