Basic Information
VIS ID
TVIS30011452
Fusion event
HIV-chr10 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
82282483/80522727 (Hg38)
End
82282483/80522727 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA10D
Nearest miRNA
hsa-mir-1265/Upstream/4970174; hsa-mir-107/Downstream/5741967;
Nearest TSS
ENST00000439456/Upstream/7260; ENST00000646907/Downstream/13215;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/67723, chr10-CpG: 56/Downstream/13018
Nearby gene
TSPAN14(No orient, 92)
Upstream sequence
TAAAGTGAAAAGTGAAAGTATGTCTTCTGTTACGCAGAGGTAACTACTATTAGGAATCCTTCCTGAAAATGTCCATGCATCTACTCAGGTCATCACACCC
Downstream sequence
ATGGAATCATTTTACATACTATTTTATGAGTGTTACTTAATATACTGATCCACAGTGCGTTTTCACGGTCACGCCATCAGTTGTAGGAGTGTGCCAAGAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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