Basic Information
VIS ID
TVIS30011457
Fusion event
HIV-PTEN integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q23.31
Reference genome
End
89689448/87929691 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
Target gene
miRNAs that regulate target gene
hsa-mir-17-5p ; hsa-mir-217 ; hsa-mir-216a-5p ; hsa-mir-214-3p ; hsa-mir-26a-5p ; hsa-mir-21-5p ; hsa-mir-494-3p ; hsa-mir-19a-3p ; hsa-mir-141-3p ; hsa-mir-20a-5p ; hsa-mir-18a-5p ; hsa-mir-19b-3p ; hsa-mir-221-3p ; hsa-mir-222-3p ; hsa-mir-106b-5p ; hsa-mir-29b-3p ; hsa-mir-519d-3p ; hsa-mir-93-5p ; hsa-mir-519a-3p ; hsa-mir-519c-3p ; hsa-mir-103a-3p ; hsa-mir-107 ; hsa-mir-22-3p ; hsa-mir-25-3p ; hsa-mir-23a-3p ; hsa-mir-29a-3p ; hsa-mir-23b-3p ; hsa-mir-144-3p ; hsa-mir-106a-5p ; hsa-mir-193b-3p ; hsa-mir-181b-5p ; hsa-mir-182-5p ; hsa-mir-128-3p ; hsa-mir-29c-3p ; hsa-mir-425-5p ; hsa-mir-382-5p ; hsa-mir-92a-1-5p ; hsa-mir-92a-3p ; hsa-mir-32-5p ; hsa-mir-200a-3p ; hsa-mir-130b-3p ; hsa-mir-301a-3p ; hsa-mir-492 ; hsa-mir-20b-5p ; hsa-mir-10b-5p ; hsa-mir-155-3p ; hsa-mir-205-5p ; hsa-mir-429 ; hsa-mir-718 ; hsa-mir-10a-5p ; hsa-mir-92b-3p ; hsa-mir-153-3p ; hsa-mir-26b-5p ; hsa-mir-320a ; hsa-mir-543 ; hsa-mir-376a-5p ; hsa-mir-7856-5p ; hsa-mir-4653-3p ; hsa-mir-4328 ; hsa-mir-34a-3p ; hsa-mir-607 ; hsa-mir-3658 ; hsa-mir-6842-3p ; hsa-mir-3144-3p ; hsa-mir-3671 ; hsa-mir-3653-3p ; hsa-mir-5787 ; hsa-mir-4505 ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-4791 ; hsa-mir-3201 ; hsa-mir-1287-5p ; hsa-mir-7853-5p ; hsa-mir-105-5p ; hsa-mir-4272 ; hsa-mir-889-5p ; hsa-mir-6074 ; hsa-mir-6512-5p ; hsa-mir-524-5p ; hsa-mir-520d-5p ; hsa-mir-216b-3p ; hsa-mir-603 ; hsa-mir-8485 ; hsa-mir-548av-3p ; hsa-mir-26a-2-3p ; hsa-mir-26a-1-3p ; hsa-mir-652-5p ; hsa-mir-548as-3p ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-377-3p ; hsa-mir-6826-5p ; hsa-mir-301b-3p ; hsa-mir-130a-3p ; hsa-mir-181a-5p ; hsa-mir-29a-5p ; hsa-mir-142-5p ; hsa-mir-106a-3p ; hsa-mir-106b-3p ; hsa-mir-17-3p ; hsa-mir-20a-3p ; hsa-mir-193a-3p ; hsa-mir-190b ; hsa-mir-370-5p ; hsa-mir-302a-3p ; hsa-mir-301a-5p ; hsa-mir-200a-5p ; hsa-mir-130a-5p ; hsa-mir-181c-5p ; hsa-mir-200c-3p ; hsa-mir-518c-3p ; hsa-mir-638 ; hsa-mir-200c-5p ; hsa-mir-486-5p ; hsa-mir-494-5p ; hsa-mir-744-3p ; hsa-mir-1273g-3p ; hsa-mir-1250-3p ; hsa-mir-155-5p ; hsa-mir-21-3p ; hsa-mir-152-3p
Nearest miRNA
hsa-mir-1265/Upstream/425737; hsa-mir-107/Downstream/1133644;
Nearest cancer related gene
PTEN(TSG, No orient, 0)
Upstream sequence
ATATATGTGCATATGTCATTACTAAATGCATTTTCTTTCTAGAAAAACTCAATATACTAAATTGTACTAAAAAGGAAAAGCTTGTTTTGTTTTGAGTGGT
Downstream sequence
AGTATGAAAGTTGTTTTATTTTAGGTCTGACCAGTTAGAAACCAATGGATTGTAGTTTATTTATAATTAGTTAAACCTTCATGTGAATTTGGTTTTGAAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate