VISDB Viral Integration Site DataBase

VIS ID

TVIS30011461

Fusion event

HIV-PCGF5 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr10

Cytoband

q23.32

Reference genome

Start

End

92984174/91224417 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-373-3p ; hsa-mir-375 ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-92a-3p ; hsa-mir-17-5p ; hsa-mir-30a-5p ; hsa-mir-30c-5p ; hsa-mir-30d-5p ; hsa-mir-30b-5p ; hsa-mir-30e-5p ; hsa-mir-154-5p ; hsa-mir-4776-3p ; hsa-mir-4659b-5p ; hsa-mir-4659a-5p ; hsa-mir-5590-5p ; hsa-mir-548at-5p ; hsa-mir-548l ; hsa-mir-8054 ; hsa-mir-548k ; hsa-mir-548av-5p ; hsa-mir-559 ; hsa-mir-548y ; hsa-mir-548w ; hsa-mir-548o-5p ; hsa-mir-548j-5p ; hsa-mir-548i ; hsa-mir-548h-5p ; hsa-mir-548d-5p ; hsa-mir-548c-5p ; hsa-mir-548bb-5p ; hsa-mir-548b-5p ; hsa-mir-548ay-5p ; hsa-mir-548au-5p ; hsa-mir-548as-5p ; hsa-mir-548ar-5p ; hsa-mir-548aq-5p ; hsa-mir-548ap-5p ; hsa-mir-548am-5p ; hsa-mir-548ak ; hsa-mir-548ae-5p ; hsa-mir-548ad-5p ; hsa-mir-548ab ; hsa-mir-548a-5p

Nearest miRNA

hsa-mir-107/Upstream/1631590; hsa-mir-1287/Downstream/4839898;

Nearest TSS

Nearest CpG islands

None/Target, chr10-CpG: 68/Upstream/3209, chr10-CpG: 103/Downstream/185313

Upstream sequence

AGTTTGCTGTTGCCCTGTATTGTTATTTAACTTGAACAGTTAATTAACTAtcatcgaacagacatttattgagtactttgtgtgtcaggcactgtgctgg

Downstream sequence

ggcatgagataataaagaagggcacaagataataaagaagtctctgctcaagaagtataattctagtaggaaaactaattttaaaaatgccatattagtg