Basic Information
VIS ID
TVIS30011462
Fusion event
HIV-LOC101927013 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q23.33
Reference genome
GRCh37/hg19
Start
95508958/93749201 (Hg38)
End
95508958/93749201 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA10D
Target gene
LOC101927013
Nearest miRNA
hsa-mir-107/Upstream/4156374; hsa-mir-1287/Downstream/2315114;
Nearest TSS
ENST00000439456/Upstream/46629; ENST00000478763/Downstream/8608;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/46458, chr10-CpG: 72/Downstream/144683
Nearby gene
LGI1(No orient, 8608)
Upstream sequence
TTATTCATTCACTAGCTTCAGGCATATGGTGCAAGATGAAGCAGGAGGCAACTAGGCCCAGTGTTTTCAGAACTCCTCAGGACACCCAAACAGCTATTTG
Downstream sequence
CTACTTACTTTGGGAGGTGCAAGAACCTGCTTAACACTTTCCTTGTCTTTATGGTAATCACTCCCCAGTAGGAGTGCTGGCAGGGGCTGCTTACATGACA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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