Basic Information
VIS ID
TVIS30011465
Fusion event
HIV-PI4K2A integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
99421024/97661267 (Hg38)
End
99421024/97661267 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA10D ; FRA10A ; FRA10B
Target gene
PI4K2A
miRNAs that regulate target gene
hsa-mir-128-3p ; hsa-mir-877-5p ; hsa-mir-3124-3p ; hsa-mir-6844 ; hsa-mir-4540 ; hsa-mir-6832-3p ; hsa-mir-483-3p ; hsa-mir-6838-3p ; hsa-mir-204-5p ; hsa-mir-211-5p ; hsa-mir-9-5p
Nearest miRNA
hsa-mir-107/Upstream/832503; hsa-mir-1287/Downstream/214546;
Nearest TSS
ENST00000439456/Upstream/20581; ENST00000451097/Downstream/26056;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/20042, chr10-CpG: 76/Downstream/25672
Upstream sequence
tttttagtagagacggggtttcaccgtgttagccaggatggtctcgatctcctgacctcgtgatccgcccacctcggcctcccaaagtgctgggattaca
Downstream sequence
ggagtgagccaccgcgcccggccactgctggattattttaaagcaaatctgagacatcattttatagcatccatagatacctccatatgttcttgaagag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate