VISDB Viral Integration Site DataBase

VIS ID

TVIS30011478

Fusion event

HIV-PDCD4 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr10

Cytoband

q25.2

Reference genome

Start

End

112639616/110879858 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

FRA10D ; FRA10A ; FRA10B

Target gene

miRNAs that regulate target gene

hsa-mir-16-5p ; hsa-mir-15a-5p ; hsa-mir-1-3p ; hsa-mir-21-5p ; hsa-mir-200a-3p ; hsa-mir-183-5p ; hsa-mir-499a-5p ; hsa-mir-182-5p ; hsa-mir-335-5p ; hsa-mir-155-5p ; hsa-mir-196a-5p ; hsa-mir-197-3p ; hsa-mir-10b-5p ; hsa-mir-548j-3p ; hsa-mir-548x-3p ; hsa-mir-548ae-3p ; hsa-mir-548ah-3p ; hsa-mir-548aj-3p ; hsa-mir-548am-3p ; hsa-mir-548aq-3p ; hsa-mir-5582-3p ; hsa-mir-548c-3p ; hsa-mir-513b-3p ; hsa-mir-3163 ; hsa-mir-3662 ; hsa-mir-6826-3p ; hsa-mir-590-5p ; hsa-mir-548m ; hsa-mir-3653-3p ; hsa-mir-3658 ; hsa-mir-4436b-5p ; hsa-mir-5197-3p ; hsa-mir-5579-3p ; hsa-mir-6509-3p ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-320a ; hsa-mir-4804-3p ; hsa-mir-655-5p ; hsa-mir-5003-3p ; hsa-mir-524-5p ; hsa-mir-520d-5p ; hsa-mir-6756-3p ; hsa-mir-3127-3p ; hsa-mir-329-5p ; hsa-mir-4748 ; hsa-mir-4464 ; hsa-mir-340-5p ; hsa-mir-218-5p ; hsa-mir-4720-3p ; hsa-mir-5089-5p ; hsa-mir-4279 ; hsa-mir-6778-3p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-150-5p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-6814-5p ; hsa-mir-5697 ; hsa-mir-5571-5p ; hsa-mir-562 ; hsa-mir-93-3p ; hsa-mir-202-3p ; hsa-mir-21-3p ; hsa-mir-181b-5p ; hsa-mir-93-5p ; hsa-mir-208a-3p ; hsa-mir-744-3p ; hsa-mir-330-3p ; hsa-mir-129-1-3p ; hsa-mir-129-2-3p ; hsa-mir-216a-5p ; hsa-mir-4763-5p ; hsa-mir-938

Nearest miRNA

hsa-mir-107/Upstream/6611453; hsa-mir-202/Downstream/18232;

Nearest TSS

Nearest CpG islands

None/Target, chr10-CpG: 68/Upstream/7140, chr10-CpG: 131/Downstream/38691

Nearest cancer related gene

PDCD4(TSG, No orient, 0)

Upstream sequence

tttgaagactggaggcagggagactacttatgagactagtgaaataatttggctctaattgatgatTTTGTTTAAAACAAAACATTCCTACCTTCCTAAG

Downstream sequence

TATGTCAAGAATTGTAAAGATTTAAACACATGTATGCTTTTTATAGGTTGGTGAAAATTTTTGGTTTCAACATGTCTTAAAACATATTAAAGCCCATGCA